PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g014520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 321aa    MW: 36193.1 Da    PI: 5.327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g014520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12153196654
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  Sopen02g014520.1 153 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 196
                       589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-15150205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10153196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-5154201No hitNo description
Gene3DG3DSA:4.10.280.102.3E-15154214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.59E-4247288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MELSEHDILE ELLALPRKES LNDFLPNGNG WTFESPLPFY QNPEFIALNS SLLGLISPPI  60
TTSHSNFPNF TSPESYQFLD SSFTGTPLLD DYSVVENHEE FGGINPGDFH GLQQELNSFG  120
DVKVEESNSR LMGNVGEKKS KIRKMEGQPS KNLMAERRRR KRLNDRLSML RSIVPKISKM  180
DRTSILGDAI DYMKELLEKI HTLREDDNVK DEIKDIKFVG NFKELKPNEA LVKKPPKFEV  240
ERRNADTRIE ICCSAKPGLL LSTVSTLEAL GLDVQQCVIS CFSDFSLQAS CSEAREHRTI  300
LSGEDVKQTL FKTAGFGGRC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155162ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063856.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL19e-81BH093_ARATH; Transcription factor bHLH93
TrEMBLK4B6M80.0K4B6M8_SOLLC; Uncharacterized protein
STRINGSolyc02g063430.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-82beta HLH protein 93